科研成果
发表论文:
1. Deep learning reveals determinants of transcriptional infidelity at nucleotide resolution in the allopolyploid line by goldfish and common carp hybrids. Jing, Kaizhuang, Wei, Tingchu, Gu, Xuedie, Lin, Guoliang, Liu, Lin and Luo, Jing. Briefings in Bioinformatics, SCI 2025.
2. Puzzle Hi-C: An accurate scaffolding software. Lin, Guoliang, Huang, Zhiru, Yue, Tingsong, Chai, Jing, Li, Yan, Yang, Huimin, Qin, Wanting, Yang, Guobing, Murphy, Robert W., Zhang, Ya-ping, Zhang, Zijie, Zhou, Wei and Luo, Jing. PLOS ONE, SCI 2024.
3. Association filtering and generative adversarial networks for predicting lncRNA-associated disease. Zhong, Hua, Luo, Jing, Tang, Lin, Liao, Shicheng, Lu, Zhonghao, Lin, Guoliang, Murphy, Robert W. and Liu, Lin. BMC Bioinformatics, SCI 2023.
4. Large-Scale Chromosomal Changes Lead to Genome-Level Expression Alterations, Environmental Adaptation, and Speciation in the Gayal ( Bos frontalis ). Li, Yan, Wang, Sheng, Zhang, Zhe, Luo, Jing, Lin, Guo Liang, Deng, Wei-Dong, Guo, Zhifan, Han, Feng Ming, Wang, Li-Li, Li, Jie, Wu, Shi-Fang, Liu, He-Qun, He, Sheng, Murphy, Robert W, Zhang, Zi-Jie, Cooper, David N, Wu, Dong-Dong and Zhang, Ya-Ping. Molecular Biology and Evolution, SCI 2023.
5. Transcriptome analysis confirms aquatic animals have less risk by carrying on human respiratory viruses. Chen, Yuan, Yue, Tingsong, Lin, Guoliang, Luo, Xi, Yang, Huimin, Murphy, Robert W., Gao, Siyuan and Luo, Jing. Reproduction and Breeding, SCI 2023.
6. ReHiC: Enhancing Hi-C data resolution via residual convolutional network. Z, Cheng, L, Liu, G, Lin, C, Yi, X, Chu, Y, Liang, W, Zhou and X, Jin. Journal of Bioinformatics and Computational Biology, SCI 2021.
7. From asymmetrical to balanced genomic diversification during rediploidization: Subgenomic evolution in allotetraploid fish. Luo, Jing, Chai, Jing, Wen, Yanling, Tao, Min, Lin, Guoliang, Liu, Xiaochuan, Ren, Li, Chen, Zeyu, Wu, Shigang, Li, Shengnan, Wang, Yude, Qin, Qinbo, Wang, Shi, Gao, Yun, Huang, Feng, Wang, Lu, Ai, Cheng, Wang, Xiaobo, Li, Lianwei, Ye, Chengxi, Yang, Huimin, Luo, Mi, Chen, Jie, Hu, Hong, Yuan, Liujiao, Zhong, Li, Wang, Jing, Xu, Jian, Du, Zhenglin, Ma, Zhanshan (Sam), Murphy, Robert W., Meyer, Axel, Gui, Jianfang, Xu, Peng, Ruan, Jue, Chen, Z. Jeffrey, Liu, Shaojun, Lu, Xuemei and Zhang, Ya-ping. Science Advances, SCI 2020.
8. 脊椎动物多倍体基因组演化研究现状——模型选取及研究方法进展. 柴静, 林国亮, 黄峰和Murphy. 中国科学: 生命科学 2019.
9. Homoeologue expression insights into the basis of growth heterosis at the intersection of ploidy and hybridity in Cyprinidae. Ren, Li, Li, Wuhui, Tao, Min, Qin, Qinbo, Luo, Jing, Chai, Jing, Tang, Chenchen, Xiao, Jun, Tang, Xiaojun, Lin, Guoliang, Zhang, Chun, Duan, Wei, Hong, Yunhan and Liu, Shaojun. Scientific Reports, SCI 2016.
10. Genomic incompatibilities in the diploid and tetraploid offspring of the goldfish × common carp cross. Liu, Shaojun, Luo, Jing, Chai, Jing, Ren, Li, Zhou, Yi, Huang, Feng, Liu, Xiaochuan, Chen, Yubao, Zhang, Chun, Tao, Min, Lu, Bin, Zhou, Wei, Lin, Guoliang, Mai, Chao, Yuan, Shuo, Wang, Jun, Li, Tao, Qin, Qinbo, Feng, Hao, Luo, Kaikun, Xiao, Jun, Zhong, Huan, Zhao, Rurong, Duan, Wei, Song, Zhenyan, Wang, Yanqin, Wang, Jing, Zhong, Li, Wang, Lu, Ding, Zhaoli, Du, Zhenglin, Lu, Xuemei, Gao, Yun, Murphy, Robert W., Liu, Yun, Meyer, Axel and Zhang, Ya-Ping. Proceedings of the National Academy of Sciences, SCI 2016.
11. VennPainter: A Tool for the Comparison and Identification of Candidate Genes Based on Venn Diagrams. Lin, Guoliang, Chai, Jing, Yuan, Shuo, Mai, Chao, Cai, Li, Murphy, Robert W., Zhou, Wei and Luo, Jing. PLOS ONE, SCI 2016.